Commit existing codebase

.dockerignore

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+.idea
+venv
+.env*
+./postgres-data
+.git*

.env.dev

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+CGNO_ID_JWT_SECRET=secret
+
+# Database
+CGNO_ID_DB_USERNAME=root
+CGNO_ID_DB_PASSWORD=root
+CGNO_ID_DB_HOST=127.0.0.1
+CGNO_ID_DB_NAME=cgno-id
+#

.gitignore

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+.idea
+venv
+postgres-data

Dockerfile

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+FROM python:3.9.2-slim
+
+EXPOSE 8000
+WORKDIR /app
+
+COPY poetry.lock pyproject.toml ./
+RUN pip install poetry==1.1 && \
+    poetry config virtualenvs.in-project true && \
+    poetry install --no-dev
+
+COPY . ./
+
+CMD poetry run alembic upgrade head && \
+    poetry run uvicorn --host=0.0.0.0 app.main:app

alembic.ini

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+# A generic, single database configuration.
+
+[alembic]
+# path to migration scripts
+script_location = app/migrations
+
+# template used to generate migration files
+# file_template = %%(rev)s_%%(slug)s
+
+# timezone to use when rendering the date
+# within the migration file as well as the filename.
+# string value is passed to dateutil.tz.gettz()
+# leave blank for localtime
+# timezone =
+
+# max length of characters to apply to the
+# "slug" field
+# truncate_slug_length = 40
+
+# set to 'true' to run the environment during
+# the 'revision' command, regardless of autogenerate
+# revision_environment = false
+
+# set to 'true' to allow .pyc and .pyo files without
+# a source .py file to be detected as revisions in the
+# versions/ directory
+# sourceless = false
+
+# version location specification; this defaults
+# to app/migrations/versions.  When using multiple version
+# directories, initial revisions must be specified with --version-path
+# version_locations = %(here)s/bar %(here)s/bat app/migrations/versions
+
+# the output encoding used when revision files
+# are written from script.py.mako
+# output_encoding = utf-8
+
+[post_write_hooks]
+# post_write_hooks defines scripts or Python functions that are run
+# on newly generated revision scripts.  See the documentation for further
+# detail and examples
+
+# format using "black" - use the console_scripts runner, against the "black" entrypoint
+# hooks=black
+# black.type=console_scripts
+# black.entrypoint=black
+# black.options=-l 79
+
+# Logging configuration
+[loggers]
+keys = root,sqlalchemy,alembic
+
+[handlers]
+keys = console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = WARN
+handlers = console
+qualname =
+
+[logger_sqlalchemy]
+level = WARN
+handlers =
+qualname = sqlalchemy.engine
+
+[logger_alembic]
+level = INFO
+handlers =
+qualname = alembic
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(levelname)-5.5s [%(name)s] %(message)s
+datefmt = %H:%M:%S

app/auth/dto.py

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+from pydantic import BaseModel
+
+
+class Credentials(BaseModel):
+    username: str
+    password: str
+
+
+class TokenModel(BaseModel):
+    token: str

app/auth/handlers.py

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+from fastapi import APIRouter, Depends, HTTPException
+from sqlalchemy.orm import Session
+
+from app.auth.dto import Credentials, TokenModel
+from app.auth.service import authenticate
+from app.db import get_db
+
+router = APIRouter()
+
+
+@router.post("/auth", status_code=200, response_model=TokenModel)
+def issue_access_token(credentials: Credentials, db: Session = Depends(get_db)) -> TokenModel:
+    token = authenticate(credentials, db)
+    if token is None:
+        raise HTTPException(status_code=401)
+    else:
+        return TokenModel(token=token)

app/auth/middleware.py

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+from fastapi import Depends, HTTPException
+from fastapi.security import HTTPBearer, HTTPAuthorizationCredentials
+from jose import JWTError
+
+from app.auth.service import verify_token
+from app.user.model import User
+from app.user.service import get_user_by_id
+from app.db import get_db
+
+
+def get_auth_user(auth: HTTPAuthorizationCredentials = Depends(HTTPBearer()), db=Depends(get_db)) -> User:
+    try:
+        decoded_token = verify_token(auth.credentials)
+        auth_user = get_user_by_id(db, int(decoded_token["sub"]))
+        return auth_user
+    except JWTError:
+        raise HTTPException(status_code=403, detail="Invalid token")

app/auth/service.py

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+import os
+from datetime import datetime, timedelta
+from typing import Optional
+
+from jose import jwt
+from jose.constants import ALGORITHMS
+from sqlalchemy.orm import Session
+
+from app.auth.dto import Credentials
+from app.config import config
+from app.user.service import get_user_by_username, passwords_match
+
+JWT_SECRET = config["CGNO_ID_JWT_SECRET"]
+JWT_ISSUER = "Energia"
+
+
+def authenticate(credentials: Credentials, db: Session) -> Optional[str]:
+    user = get_user_by_username(db, credentials.username)
+    if passwords_match(user.password, credentials.password):
+        token = issue_token(user.id)
+        return token
+    else:
+        return None
+
+
+def issue_token(user_id: int) -> str:
+    now = datetime.utcnow()
+    claims = {
+        "sub": str(user_id),
+        "iss": JWT_ISSUER,
+        "iat": now,
+        "nbf": now,
+        "exp": now + timedelta(weeks=1)
+    }
+    return jwt.encode(claims, JWT_SECRET, algorithm=ALGORITHMS.HS256)
+
+
+def verify_token(token: str) -> dict:
+    return jwt.decode(token, JWT_SECRET, algorithms=ALGORITHMS.HS256, issuer=JWT_ISSUER)

app/config.py

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+import os
+
+from dotenv import dotenv_values
+
+config = {
+    **dotenv_values(".env.dev"),
+    **dotenv_values(".env"),
+    **os.environ
+}

app/db.py

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+from sqlalchemy import create_engine
+from sqlalchemy.ext.declarative import declarative_base
+from sqlalchemy.orm import sessionmaker
+
+from app.config import config
+
+DATABASE_URL = f"postgresql://{config['CGNO_ID_DB_USERNAME']}:{config['CGNO_ID_DB_PASSWORD']}@{config['CGNO_ID_DB_HOST']}/{config['CGNO_ID_DB_NAME']}"
+
+engine = create_engine(DATABASE_URL)
+
+session_factory = sessionmaker(bind=engine)
+
+EntityBase = declarative_base()
+
+
+def get_db():
+    db = session_factory()
+    try:
+        yield db
+    finally:
+        db.close()

app/main.py

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+from fastapi import FastAPI, APIRouter
+from starlette.middleware.cors import CORSMiddleware
+
+from app.user.handlers import router as user_router
+from app.auth.handlers import router as auth_router
+
+
+def main_router() -> APIRouter:
+    router = APIRouter()
+    router.include_router(user_router, tags=["users"], prefix="/users")
+    router.include_router(auth_router, tags=["auth"])
+    return router
+
+
+app = FastAPI(title="cognio ID API")
+
+app.add_middleware(
+    CORSMiddleware,
+    allow_origins=["*"],
+    allow_credentials=True,
+    allow_methods=["*"],
+    allow_headers=["*"]
+)
+
+app.include_router(main_router())

app/migrations/env.py

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+import pathlib
+import sys
+from logging.config import fileConfig
+
+from sqlalchemy import engine_from_config
+from sqlalchemy import pool
+
+from alembic import context
+
+sys.path.append(str(pathlib.Path(__file__).resolve().parents[2]))
+
+from app.db import DATABASE_URL
+from app.user.model import User
+
+# this is the Alembic Config object, which provides
+# access to the values within the .ini file in use.
+config = context.config
+
+# Interpret the config file for Python logging.
+# This line sets up loggers basically.
+fileConfig(config.config_file_name)
+
+# add your model's MetaData object here
+# for 'autogenerate' support
+# from myapp import mymodel
+# target_metadata = mymodel.Base.metadata
+target_metadata = [User.metadata]
+
+# other values from the config, defined by the needs of env.py,
+# can be acquired:
+# my_important_option = config.get_main_option("my_important_option")
+# ... etc.
+config.set_main_option("sqlalchemy.url", DATABASE_URL)
+
+
+def run_migrations_offline():
+    """Run migrations in 'offline' mode.
+
+    This configures the context with just a URL
+    and not an Engine, though an Engine is acceptable
+    here as well.  By skipping the Engine creation
+    we don't even need a DBAPI to be available.
+
+    Calls to context.execute() here emit the given string to the
+    script output.
+
+    """
+    url = config.get_main_option("sqlalchemy.url")
+    context.configure(
+        url=url,
+        target_metadata=target_metadata,
+        literal_binds=True,
+        dialect_opts={"paramstyle": "named"},
+    )
+
+    with context.begin_transaction():
+        context.run_migrations()
+
+
+def run_migrations_online():
+    """Run migrations in 'online' mode.
+
+    In this scenario we need to create an Engine
+    and associate a connection with the context.
+
+    """
+    connectable = engine_from_config(
+        config.get_section(config.config_ini_section),
+        prefix="sqlalchemy.",
+        poolclass=pool.NullPool,
+    )
+
+    with connectable.connect() as connection:
+        context.configure(
+            connection=connection, target_metadata=target_metadata
+        )
+
+        with context.begin_transaction():
+            context.run_migrations()
+
+
+if context.is_offline_mode():
+    run_migrations_offline()
+else:
+    run_migrations_online()

app/migrations/script.py.mako

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+"""${message}
+
+Revision ID: ${up_revision}
+Revises: ${down_revision | comma,n}
+Create Date: ${create_date}
+
+"""
+from alembic import op
+import sqlalchemy as sa
+${imports if imports else ""}
+
+# revision identifiers, used by Alembic.
+revision = ${repr(up_revision)}
+down_revision = ${repr(down_revision)}
+branch_labels = ${repr(branch_labels)}
+depends_on = ${repr(depends_on)}
+
+
+def upgrade():
+    ${upgrades if upgrades else "pass"}
+
+
+def downgrade():
+    ${downgrades if downgrades else "pass"}

app/migrations/versions/646ae6f3e17a_initial.py

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+"""Initial
+
+Revision ID: 646ae6f3e17a
+Revises: 
+Create Date: 2021-02-25 00:59:54.287382
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '646ae6f3e17a'
+down_revision = None
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('users',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('username', sa.String(length=32), nullable=False),
+    sa.Column('email', sa.String(), nullable=False),
+    sa.Column('given_name', sa.String(length=32), nullable=False),
+    sa.Column('family_name', sa.String(length=32), nullable=True),
+    sa.Column('sex', sa.Enum('NOT_KNOWN', 'MALE', 'FEMALE', 'NOT_APPLICABLE', name='usersex'), nullable=False),
+    sa.Column('birthdate', sa.Date(), nullable=True),
+    sa.Column('password', sa.String(), nullable=False),
+    sa.Column('creation_date', sa.DateTime(), nullable=False),
+    sa.PrimaryKeyConstraint('id'),
+    sa.UniqueConstraint('email'),
+    sa.UniqueConstraint('username')
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table('users')
+    # ### end Alembic commands ###

app/user/dto.py

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+import calendar
+from datetime import datetime, date
+from typing import Optional
+
+from pydantic import BaseModel
+
+from app.user.model import User, Sex
+
+
+class UserCreationModel(BaseModel):
+    username: str
+    email: str
+    password: str
+    given_name: str
+    family_name: Optional[str]
+    sex: str
+    birthdate: Optional[int]
+
+    def to_entity(self) -> User:
+        birthdate = None
+
+        if self.birthdate is not None:
+            birthdate = date.fromtimestamp(self.birthdate)
+
+        return User(
+            username=self.username,
+            email=self.email,
+            password=self.password,
+            given_name=self.given_name,
+            family_name=self.family_name,
+            sex=Sex[self.sex],
+            birthdate=birthdate
+        )
+
+
+class UserResourceModel(BaseModel):
+    id: int
+    username: str
+    email: str
+    given_name: str
+    family_name: Optional[str]
+    sex: str
+    birthdate: Optional[int]
+
+    @staticmethod
+    def from_entity(user: User):
+        birthdate = None
+
+        if user.birthdate is not None:
+            birthdate = calendar.timegm(user.birthdate.timetuple())
+
+        return UserResourceModel(
+            id=user.id,
+            username=user.username,
+            email=user.email,
+            given_name=user.given_name,
+            family_name=user.family_name,
+            sex=user.sex.name,
+            birthdate=birthdate
+        )

app/user/handlers.py

@@ -0,0 +1,59 @@
+from typing import Any
+
+from fastapi import APIRouter, Depends, HTTPException
+from sqlalchemy.orm import Session
+from starlette.responses import Response
+
+from app.auth.middleware import get_auth_user
+from app.user.dto import UserCreationModel, UserResourceModel
+from app.user.model import User
+import app.user.service as user_service
+from app.db import get_db
+
+router = APIRouter()
+
+
+@router.post("", status_code=201, response_model=UserResourceModel)
+async def create_user(model: UserCreationModel, db: Session = Depends(get_db)) -> UserResourceModel:
+    user = model.to_entity()
+    created_user = user_service.create_user(db, user)
+    return UserResourceModel.from_entity(created_user)
+
+
+@router.get("/{id}", status_code=200, response_model=UserResourceModel)
+async def get_user_by_id(
+    id: int,
+    auth_user: User = Depends(get_auth_user),
+    db: Session = Depends(get_db)
+) -> UserResourceModel:
+    check_access(auth_user, id)
+
+    user = user_service.get_user_by_id(db, id)
+
+    if user is None:
+        raise HTTPException(status_code=404, detail="User not found")
+
+    return UserResourceModel.from_entity(user)
+
+
+@router.delete("/{id}", status_code=204)
+async def delete_user_by_id(
+    id: int,
+    auth_user: User = Depends(get_auth_user),
+    db: Session = Depends(get_db)
+):
+    check_access(auth_user, id)
+
+    user_service.delete_user_by_id(db, id)
+    return Response(status_code=204)
+
+
+def check_access(auth_user: User, param: Any):
+    access_exception = HTTPException(status_code=403, detail="Forbidden")
+
+    if type(param) is int:
+        if not (auth_user.id == param):
+            raise access_exception
+    elif type(param) is User:
+        if not ((auth_user.username == param.username) and (auth_user.email == param.email)):
+            raise access_exception

app/user/model.py

@@ -0,0 +1,29 @@
+import enum
+from datetime import datetime
+
+from sqlalchemy import Column, String, Integer, DateTime, Enum, Date
+
+from app.db import EntityBase
+
+
+class Sex(enum.Enum):
+    """Human sex according to ISO/IEC 5218."""
+
+    NOT_KNOWN = 0,
+    MALE = 1,
+    FEMALE = 2,
+    NOT_APPLICABLE = 9
+
+
+class User(EntityBase):
+    __tablename__ = "users"
+
+    id = Column(Integer, primary_key=True)
+    username = Column(String(length=32), unique=True, nullable=False)
+    email = Column(String, unique=True, nullable=False)
+    password = Column(String, nullable=False)
+    given_name = Column(String(length=32), nullable=False)
+    family_name = Column(String(length=32))
+    sex = Column(Enum(Sex), nullable=False, default=Sex.NOT_KNOWN)
+    birthdate = Column(Date)
+    creation_date = Column(DateTime, nullable=False, default=datetime.utcnow())

app/user/service.py

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+from typing import Optional
+
+from passlib.context import CryptContext
+from sqlalchemy.orm import Session
+
+from app.user.model import User
+
+pwd_context = CryptContext(schemes=["bcrypt"])
+
+
+def create_user(db: Session, user: User) -> User:
+    if get_user_by_username_or_email(db, user.username, user.email) is not None:
+        raise Exception()
+
+    user.password = pwd_context.hash(user.password)
+    db.add(user)
+    db.commit()
+    db.refresh(user)
+    return user
+
+
+def get_user_by_id(db: Session, id: int) -> Optional[User]:
+    return db.query(User).filter(User.id == id).one_or_none()
+
+
+def get_user_by_username(db: Session, username: str) -> Optional[User]:
+    return db.query(User).filter(User.username == username).one_or_none()
+
+
+def get_user_by_username_or_email(db: Session, username: str, email: str) -> Optional[User]:
+    return db.query(User).filter(User.username == username, User.email == email).one_or_none()
+
+
+def delete_user_by_id(db: Session, id: int):
+    user = get_user_by_id(db, id)
+    if user is not None:
+        db.delete(user)
+        db.commit()
+
+
+def passwords_match(hashed: str, raw: str) -> bool:
+    return pwd_context.verify(raw, hashed)

poetry.lock

@@ -0,0 +1,595 @@
+[[package]]
+name = "alembic"
+version = "1.5.5"
+description = "A database migration tool for SQLAlchemy."
+category = "main"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+
+[package.dependencies]
+Mako = "*"
+python-dateutil = "*"
+python-editor = ">=0.3"
+SQLAlchemy = ">=1.3.0"
+
+[[package]]
+name = "bcrypt"
+version = "3.2.0"
+description = "Modern password hashing for your software and your servers"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+cffi = ">=1.1"
+six = ">=1.4.1"
+
+[package.extras]
+tests = ["pytest (>=3.2.1,!=3.3.0)"]
+typecheck = ["mypy"]
+
+[[package]]
+name = "cffi"
+version = "1.14.5"
+description = "Foreign Function Interface for Python calling C code."
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+pycparser = "*"
+
+[[package]]
+name = "click"
+version = "7.1.2"
+description = "Composable command line interface toolkit"
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
+[[package]]
+name = "cryptography"
+version = "3.4.6"
+description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+cffi = ">=1.12"
+
+[package.extras]
+docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"]
+docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
+pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"]
+sdist = ["setuptools-rust (>=0.11.4)"]
+ssh = ["bcrypt (>=3.1.5)"]
+test = ["pytest (>=6.0)", "pytest-cov", "pytest-subtests", "pytest-xdist", "pretend", "iso8601", "pytz", "hypothesis (>=1.11.4,!=3.79.2)"]
+
+[[package]]
+name = "ecdsa"
+version = "0.14.1"
+description = "ECDSA cryptographic signature library (pure python)"
+category = "main"
+optional = false
+python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+
+[package.dependencies]
+six = "*"
+
+[[package]]
+name = "fastapi"
+version = "0.63.0"
+description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+pydantic = ">=1.0.0,<2.0.0"
+starlette = "0.13.6"
+
+[package.extras]
+all = ["requests (>=2.24.0,<3.0.0)", "aiofiles (>=0.5.0,<0.6.0)", "jinja2 (>=2.11.2,<3.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "itsdangerous (>=1.1.0,<2.0.0)", "pyyaml (>=5.3.1,<6.0.0)", "graphene (>=2.1.8,<3.0.0)", "ujson (>=3.0.0,<4.0.0)", "orjson (>=3.2.1,<4.0.0)", "email_validator (>=1.1.1,<2.0.0)", "uvicorn[standard] (>=0.12.0,<0.14.0)", "async_exit_stack (>=1.0.1,<2.0.0)", "async_generator (>=1.10,<2.0.0)"]
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+doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=6.1.4,<7.0.0)", "markdown-include (>=0.5.1,<0.6.0)", "mkdocs-markdownextradata-plugin (>=0.1.7,<0.2.0)", "typer-cli (>=0.0.9,<0.0.10)", "pyyaml (>=5.3.1,<6.0.0)"]
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pyproject.toml

@@ -0,0 +1,23 @@
+[tool.poetry]
+name = "id"
+version = "0.1.0"
+description = "cognio identity system."
+authors = ["Andrey Chervyakov <cognioandrey@gmail.com>"]
+
+[tool.poetry.dependencies]
+python = "^3.9"
+fastapi = "^0.63.0"
+SQLAlchemy = "^1.3.23"
+python-jose = {extras = ["cryptography"], version = "^3.2.0"}
+passlib = {extras = ["bcrypt"], version = "^1.7.4"}
+uvicorn = "^0.13.4"
+alembic = "^1.5.5"
+pydantic = "^1.7.3"
+python-dotenv = "^0.15.0"
+psycopg2-binary = "^2.8.6"
+
+[tool.poetry.dev-dependencies]
+
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"